Segmentation

The Edinburgh Imaging downloadable segmentation software tools.

Segmentation of brain tissue: image processing methods

Document

ALFA - Algorithm for MRI neonatal brain extraction (1.53 MB / PDF)
Document

MRBrainS Challenge paper (2.92 MB / PDF)

Segmentation of brain tissues & lesions software tool

A multispectral method for segmentation of brain tissues & lesions, developed for the BRIC1936 study
Authors: Dr Maria Valdés-Hernández, Michael Jackson & Dr Dominic Job

Segmentation of microbleeds & mineral deposits software tool

Document

Guidelines for the segmentation of microbleeds and mineral deposits using Analyze 11.0 (482.92 KB / 0 )
Authors: Dr Maria Valdés-Hernández

Segmentation of mineral deposits in MR brain volumes software tool

Author: Dr Andreas Glatz

Tissue irregularity map software tool

Authors: Dr Maria Valdés-Hernández, Taku Komura & Febrian M. Rachmadi

Reference segmentations software tool

Collection Derived data from ADNI
Authors: Leonora Fatimah Agan, Dr Maria Valdés-Hernández, Dr Cyril Pernet, Stuart Reid

Digital human brain atlases software tool

Collection in Edinburgh Datashare
Authors: Michael R. Jackson, Dr Maria Valdés-Hernández

Brain imaging of normal subjects (BRAINS) software tool

Age-specific MR atlases from young adults to the very elderly (v1.0)
Authors: Dr DA Dickie, Dr D Job, Dr M Valdés-Hernández, Prof JM Wardlaw

Relevant links

Please link to the short url for the segmentation webpage:
- www.ed.ac.uk/edinburgh-imaging/analysis-tools/segmentation

Balakrishnan, R.; Valdes Hernandez, M.; Farrall, A. Automatic Segmentation of White Matter Hyperintensities from Brain Magnetic Resonance Images in the Era of Deep Learning and Big Data – A Systematic Review. (doi:10.1016/j.compmedimag.2021.101867)

This article was published on 2024-08-22