Association of common genetic variants with brain microbleeds: A Genome-wide Association Study Link to paper on Neurology. Authors Maria J Knol, Dongwei Lu, Matthew Traylor, Hieab HH Adams, José Rafael J Romero, Albert V Smith, Myriam Fornage, Edith Hofer, Junfeng Liu, Isabel C Hostettler, Michelle Luciano, Stella Trompet, Anne-Katrin Giese, Saima Hilal, Erik B van den Akker, Dina Vojinovic, Shuo Li, Sigurdur Sigurdsson, Sven J van der Lee, Clifford R Jack, Duncan Wilson, Pinar Yilmaz, Claudia L Satizabal, David C.M. Liewald, Jeroen van der Grond, Christopher Chen, Yasaman Saba, Aad van der Lugt, Mark E Bastin, B Gwen Windham, Ching Yu Cheng, Lukas Pirpamer, Kejal Kantarci, Jayandra J Himali, Qiong Yang, Zoe Morris, Alexa S Beiser, Daniel J Tozer, Meike W Vernooij, Najaf Amin, Marian Beekman, Jia Yu Koh, David J Stott, Henry Houlden, Reinhold Schmidt, Rebecca F Gottesman, Andrew D MacKinnon, Charles DeCarli, Vilmundur Gudnason, Ian J Deary, Cornelia M van Duijn, P Eline Slagboom, Tien Yin Wong, Natalia S Rost, J Wouter Jukema, Thomas H Mosley, David J Werring, Helena Schmidt, Joanna M Wardlaw, M Arfan Ikram, Sudha Seshadri, Lenore J Launer, Hugh S Markus, for the Alzheimer’s Disease Neuroimaging Initiative Abstract Objective: To identify common genetic variants associated with the presence of brain microbleeds (BMB). Methods: We performed genome-wide association studies in 11 population-based cohort studies & 3 case-control or case-only stroke cohorts. Genotypes were imputed to the Haplotype Reference Consortium or 1000 Genomes reference panel. BMB were rated on susceptibility-weighted or T2*-weighted gradient echo magnetic resonance imaging sequences, & further classified as lobar, or mixed (including strictly deep & infratentorial, possibly with lobar BMB). In a subset, we assessed the effects of APOE ε2 & ε4 alleles on BMB counts. We also related previously identified cerebral small vessel disease variants to BMB. Results: BMB were detected in 3,556 of the 25,862 participants, of which 2,179 were strictly lobar & 1,293 mixed. One locus in the APOE region reached genome-wide significance for its association with BMB (lead SNP rs769449; ORany BMB (95% CI)=1.33 (1.21-1.45); p=2.5x10-10). APOE ε4 alleles were associated with strictly lobar (OR (95% CI)=1.34 (1.19-1.50); p=1.0x10-6) but not with mixed BMB counts (OR (95% CI)=1.04 (0.86-1.25); p=0.68). APOE ε2 alleles did not show associations with BMB counts. Variants previously related to deep intracerebral haemorrhage & lacunar stroke, & a risk score of cerebral white matter hyperintensity variants, were associated with BMB. Conclusions: Genetic variants in the APOE region are associated with the presence of BMB, most likely due to the APOE ε4 allele count related to a higher number of strictly lobar BMB. Genetic predisposition to small vessel disease confers risk of BMB, indicating genetic overlap with other cerebral small vessel disease markers. Keywords Association studies in genetics MRI Other cerebrovascular disease/ Stroke Related links Link to paper on Neurology Professor Joanna Wardlaw Professor Ian Deary Dr Mark Bastin Alzheimer’s Disease Neuroimaging Initiative Brain & nervous system Small vessel disease (SVD) Stroke What is a MR scan? Social media tags & titles Featured paper: Association of common genetic variants with brain microbleeds: A Genome-wide Association Study. @EdinUniBrainSci @EdinUniLBC @UoE_Psychology @SchoolofPPLS Publication date 22 Sep, 2020